SMTL ID : 9lbs.1

Cryo-EM structure of Omicron BA.1 RBD complexed with ConBA-998,S309 and S304Fabs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.41 Å

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 9 residues within 4Å: Chain A: Y.31, D.114 Chain B: L.47, Y.50 Chain F: F.2, F.6, N.7, V.31, F.35 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.31, A:Y.31, A:D.114 Hydrophobic interactions: B:L.47, B:Y.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Cryo-EM structure of Omicron BA.1 RBD complexed with ConBA-998,S309 and S304Fabs. To Be Published

Release Date

2025-04-02

Peptides

Heavy chain of S309 Fab: A
Light chain of S309 Fab: B
Heavy chain of S304 Fab: C
Light chain of S304 Fab: D
Heavy chain of ConBA-998: E
Spike protein S1: F
Light chain of ConBA-998: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

E
D

F
F

G
C

Heavy chain of S309 Fab

Light chain of S309 Fab

Heavy chain of S304 Fab

Light chain of S304 Fab

Heavy chain of ConBA-998

Spike protein S1

Light chain of ConBA-998

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