SMTL ID : 9lbt.1

DPPIV-VAMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-dimer

Ligands

2 x VAL- ALA- MET- PRO: VAL-ALA-MET-PRO(Non-covalent)

VAL-ALA-MET-PRO.1: 12 residues within 4Å: Chain A: R.86, E.166, E.167, Y.508, W.590, S.591, Y.592, Y.623, Y.627, V.672, H.701, G.702 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.672 Hydrogen bonds: A:E.166, A:Y.508, A:S.591, A:Y.592, A:H.701 Water bridges: A:Y.627 VAL-ALA-MET-PRO.2: 12 residues within 4Å: Chain B: R.86, E.166, E.167, Y.508, W.590, S.591, Y.592, V.617, Y.623, Y.627, N.671, H.701 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.508, B:W.590, B:V.617 Hydrogen bonds: B:R.86, B:R.86, B:E.167, B:S.591, B:Y.592, B:Y.623, B:N.671

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, H.H. et al., Discovery of an oral-admistrated biopeptide VAMP: a novel glucose homeostasis modulator with bifunctionalities of targeting intestinal DPP-IV and microbiota. To Be Published

Release Date

2025-07-23

Peptides

Dipeptidyl peptidase 4 soluble form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dipeptidyl peptidase 4 soluble form