SMTL ID : 9m2v.1

Crystal Structure of the SARS-CoV-2 (COVID-19) main protease with inhibitor MC12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

2 x 01: [2-[methyl(phenyl)amino]-1,3-thiazol-4-yl]methanol

01.1: 15 residues within 4Å: Chain A: L.27, P.39, H.41, M.49, C.145, G.146, H.163, H.164, M.165, V.186, D.187, R.188, Q.189, T.190, Q.192 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:M.49, A:M.165, A:Q.189 Hydrogen bonds: A:H.163 01.2: 15 residues within 4Å: Chain B: L.27, P.39, H.41, M.49, C.145, G.146, H.163, H.164, M.165, V.186, D.187, R.188, Q.189, T.190, Q.192 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:M.49, B:M.165, B:Q.189 Hydrogen bonds: B:H.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, W. et al., Structure-activity relationship studies of thiazole-based derivatives leading to the identification of novel and potent SARS-CoV-2 main protease inhibitors. Eur.J.Med.Chem. (2025)

Release Date

2025-08-06

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase nsp5