SMTL ID : 9m3y.1

Arabidopsis thaliana CDC48A bound to ADP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.00 Å

Oligo State

homo-hexamer

Ligands

12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: D.213, V.214, G.215, P.255, G.256, S.257, G.258, K.259, T.260, L.261, V.388, H.392, G.416, A.417 Chain F: R.367, F.368 12 PLIP interactions: 10 interactions with chain A, 2 interactions with chain F Hydrogen bonds: A:G.215, A:G.215, A:G.256, A:S.257, A:G.258, A:K.259, A:T.260, A:T.260, A:L.261 Salt bridges: A:K.259, F:R.367, F:R.367 ADP.2: 14 residues within 4Å: Chain A: D.486, I.487, G.488, P.528, G.529, C.530, G.531, K.532, T.533, L.534, I.665, G.693, A.694, T.697 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.488, A:G.529, A:C.530, A:C.530, A:G.531, A:K.532, A:T.533, A:T.533, A:L.534 Salt bridges: A:K.532 ADP.3: 16 residues within 4Å: Chain A: R.367, F.368 Chain B: D.213, V.214, G.215, P.255, G.256, S.257, G.258, K.259, T.260, L.261, V.388, H.392, G.416, A.417 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.215, B:G.215, B:G.256, B:S.257, B:G.258, B:K.259, B:T.260, B:T.260, B:L.261 Salt bridges: B:K.259, A:R.367, A:R.367 ADP.4: 14 residues within 4Å: Chain B: D.486, I.487, G.488, P.528, G.529, C.530, G.531, K.532, T.533, L.534, I.665, G.693, A.694, T.697 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.488, B:G.529, B:C.530, B:C.530, B:G.531, B:K.532, B:T.533, B:T.533, B:L.534 Salt bridges: B:K.532 ADP.5: 16 residues within 4Å: Chain B: R.367, F.368 Chain C: D.213, V.214, G.215, P.255, G.256, S.257, G.258, K.259, T.260, L.261, V.388, H.392, G.416, A.417 12 PLIP interactions: 10 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:G.215, C:G.215, C:G.256, C:S.257, C:G.258, C:K.259, C:T.260, C:T.260, C:L.261 Salt bridges: C:K.259, B:R.367, B:R.367 ADP.6: 14 residues within 4Å: Chain C: D.486, I.487, G.488, P.528, G.529, C.530, G.531, K.532, T.533, L.534, I.665, G.693, A.694, T.697 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:G.488, C:G.529, C:C.530, C:C.530, C:G.531, C:K.532, C:T.533, C:T.533, C:L.534 Salt bridges: C:K.532 ADP.7: 16 residues within 4Å: Chain C: R.367, F.368 Chain D: D.213, V.214, G.215, P.255, G.256, S.257, G.258, K.259, T.260, L.261, V.388, H.392, G.416, A.417 12 PLIP interactions: 10 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:G.215, D:G.215, D:G.256, D:S.257, D:G.258, D:K.259, D:T.260, D:T.260, D:L.261 Salt bridges: D:K.259, C:R.367, C:R.367 ADP.8: 14 residues within 4Å: Chain D: D.486, I.487, G.488, P.528, G.529, C.530, G.531, K.532, T.533, L.534, I.665, G.693, A.694, T.697 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:G.488, D:G.529, D:C.530, D:C.530, D:G.531, D:K.532, D:T.533, D:T.533, D:L.534 Salt bridges: D:K.532 ADP.9: 16 residues within 4Å: Chain D: R.367, F.368 Chain E: D.213, V.214, G.215, P.255, G.256, S.257, G.258, K.259, T.260, L.261, V.388, H.392, G.416, A.417 12 PLIP interactions: 10 interactions with chain E, 2 interactions with chain D Hydrogen bonds: E:G.215, E:G.215, E:G.256, E:S.257, E:G.258, E:K.259, E:T.260, E:T.260, E:L.261 Salt bridges: E:K.259, D:R.367, D:R.367 ADP.10: 14 residues within 4Å: Chain E: D.486, I.487, G.488, P.528, G.529, C.530, G.531, K.532, T.533, L.534, I.665, G.693, A.694, T.697 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:G.488, E:G.529, E:C.530, E:C.530, E:G.531, E:K.532, E:T.533, E:T.533, E:L.534 Salt bridges: E:K.532 ADP.11: 16 residues within 4Å: Chain E: R.367, F.368 Chain F: D.213, V.214, G.215, P.255, G.256, S.257, G.258, K.259, T.260, L.261, V.388, H.392, G.416, A.417 12 PLIP interactions: 10 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:G.215, F:G.215, F:G.256, F:S.257, F:G.258, F:K.259, F:T.260, F:T.260, F:L.261 Salt bridges: F:K.259, E:R.367, E:R.367 ADP.12: 14 residues within 4Å: Chain F: D.486, I.487, G.488, P.528, G.529, C.530, G.531, K.532, T.533, L.534, I.665, G.693, A.694, T.697 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:G.488, F:G.529, F:C.530, F:C.530, F:G.531, F:K.532, F:T.533, F:T.533, F:L.534 Salt bridges: F:K.532

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huntington, B. et al., Plant-specific adaptations of the CDC48 unfoldase. To Be Published

Release Date

2025-10-29

Peptides

Cell division control protein 48 homolog A: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Cell division control protein 48 homolog A

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