SMTL ID : 9m4w.1

Structure of human TRPC5 bound with (-)-englerin A, class 2.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.175, C.179, C.181, C.184 Chain D: P.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.175, A:C.179, A:C.181, A:C.184 ZN.6: 5 residues within 4Å: Chain A: P.1 Chain B: H.175, C.179, C.181, C.184 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.175, B:C.179, B:C.181, B:C.184 ZN.11: 5 residues within 4Å: Chain B: P.1 Chain C: H.175, C.179, C.181, C.184 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.175, C:C.179, C:C.181, C:C.184 ZN.16: 5 residues within 4Å: Chain C: P.1 Chain D: H.175, C.179, C.181, C.184 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.175, D:C.179, D:C.181, D:C.184

4 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.2: 17 residues within 4Å: Chain A: D.436, W.437, W.438, M.441, I.487, I.490, L.491, L.494, Q.510, L.513, G.514, L.517 Chain D: F.534, T.606, M.607, T.610 Ligands: POV.3 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: A:W.437, A:W.438, A:I.487, A:I.487, A:I.487, A:I.490, A:I.490, A:L.491, A:L.513, D:F.534, D:F.534, D:T.606 Hydrogen bonds: A:W.437, A:Q.510 PTY.7: 17 residues within 4Å: Chain A: F.534, T.606, M.607, T.610 Chain B: D.436, W.437, W.438, M.441, I.487, I.490, L.491, L.494, Q.510, L.513, G.514, L.517 Ligands: POV.8 14 PLIP interactions: 3 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:F.534, A:F.534, A:T.606, B:W.437, B:W.438, B:I.487, B:I.487, B:I.487, B:I.490, B:I.490, B:L.491, B:L.513 Hydrogen bonds: B:W.437, B:Q.510 PTY.12: 17 residues within 4Å: Chain B: F.534, T.606, M.607, T.610 Chain C: D.436, W.437, W.438, M.441, I.487, I.490, L.491, L.494, Q.510, L.513, G.514, L.517 Ligands: POV.13 14 PLIP interactions: 11 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:W.437, C:W.438, C:I.487, C:I.487, C:I.487, C:I.490, C:I.490, C:L.491, C:L.513, B:F.534, B:F.534, B:T.606 Hydrogen bonds: C:W.437, C:Q.510 PTY.17: 17 residues within 4Å: Chain C: F.534, T.606, M.607, T.610 Chain D: D.436, W.437, W.438, M.441, I.487, I.490, L.491, L.494, Q.510, L.513, G.514, L.517 Ligands: POV.18 14 PLIP interactions: 11 interactions with chain D, 3 interactions with chain C Hydrophobic interactions: D:W.437, D:W.438, D:I.487, D:I.487, D:I.487, D:I.490, D:I.490, D:L.491, D:L.513, C:F.534, C:F.534, C:T.606 Hydrogen bonds: D:W.437, D:Q.510

4 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)

POV.3: 6 residues within 4Å: Chain A: L.448, L.455, W.475, I.480, L.484 Ligands: PTY.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.448, A:L.455, A:W.475, A:L.484 POV.8: 6 residues within 4Å: Chain B: L.448, L.455, W.475, I.480, L.484 Ligands: PTY.7 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.448, B:L.455, B:W.475, B:L.484 POV.13: 6 residues within 4Å: Chain C: L.448, L.455, W.475, I.480, L.484 Ligands: PTY.12 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:L.448, C:L.455, C:W.475, C:L.484 POV.18: 6 residues within 4Å: Chain D: L.448, L.455, W.475, I.480, L.484 Ligands: PTY.17 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:L.448, D:L.455, D:W.475, D:L.484

4 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.4: 16 residues within 4Å: Chain A: W.318, Y.319, F.367, F.370, T.374, L.378, L.496, L.499, F.500, A.502, N.503, L.506, W.650 Chain D: F.525, L.529, L.532 14 PLIP interactions: 10 interactions with chain A, 4 interactions with chain D Hydrophobic interactions: A:F.367, A:F.370, A:T.374, A:L.378, A:L.499, A:F.500, A:F.500, A:A.502, A:N.503, A:L.506, D:F.525, D:L.529, D:L.529, D:L.532 Y01.9: 16 residues within 4Å: Chain A: F.525, L.529, L.532 Chain B: W.318, Y.319, F.367, F.370, T.374, L.378, L.496, L.499, F.500, A.502, N.503, L.506, W.650 14 PLIP interactions: 10 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:F.367, B:F.370, B:T.374, B:L.378, B:L.499, B:F.500, B:F.500, B:A.502, B:N.503, B:L.506, A:F.525, A:L.529, A:L.529, A:L.532 Y01.14: 16 residues within 4Å: Chain B: F.525, L.529, L.532 Chain C: W.318, Y.319, F.367, F.370, T.374, L.378, L.496, L.499, F.500, A.502, N.503, L.506, W.650 14 PLIP interactions: 10 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:F.367, C:F.370, C:T.374, C:L.378, C:L.499, C:F.500, C:F.500, C:A.502, C:N.503, C:L.506, B:F.525, B:L.529, B:L.529, B:L.532 Y01.19: 16 residues within 4Å: Chain C: F.525, L.529, L.532 Chain D: W.318, Y.319, F.367, F.370, T.374, L.378, L.496, L.499, F.500, A.502, N.503, L.506, W.650 14 PLIP interactions: 10 interactions with chain D, 4 interactions with chain C Hydrophobic interactions: D:F.367, D:F.370, D:T.374, D:L.378, D:L.499, D:F.500, D:F.500, D:A.502, D:N.503, D:L.506, C:F.525, C:L.529, C:L.529, C:L.532

4 x 01: (-)-englerin A

01.5: 16 residues within 4Å: Chain A: F.523, L.524, Y.527, L.531, L.575, Q.576, F.579, W.580, V.582, L.620 Chain D: F.602, A.605, T.606, T.610, V.613, V.617 15 PLIP interactions: 11 interactions with chain A, 4 interactions with chain D Hydrophobic interactions: A:F.523, A:L.524, A:Y.527, A:Y.527, A:L.531, A:F.579, A:F.579, A:F.579, A:V.582, A:L.620, D:F.602, D:V.613, D:V.613, D:V.617 Hydrogen bonds: A:Q.576 01.10: 16 residues within 4Å: Chain A: F.602, A.605, T.606, T.610, V.613, V.617 Chain B: F.523, L.524, Y.527, L.531, L.575, Q.576, F.579, W.580, V.582, L.620 15 PLIP interactions: 11 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:F.523, B:L.524, B:Y.527, B:Y.527, B:L.531, B:F.579, B:F.579, B:F.579, B:V.582, B:L.620, A:F.602, A:V.613, A:V.613, A:V.617 Hydrogen bonds: B:Q.576 01.15: 16 residues within 4Å: Chain B: F.602, A.605, T.606, T.610, V.613, V.617 Chain C: F.523, L.524, Y.527, L.531, L.575, Q.576, F.579, W.580, V.582, L.620 15 PLIP interactions: 11 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:F.523, C:L.524, C:Y.527, C:Y.527, C:L.531, C:F.579, C:F.579, C:F.579, C:V.582, C:L.620, B:F.602, B:V.613, B:V.613, B:V.617 Hydrogen bonds: C:Q.576 01.20: 16 residues within 4Å: Chain C: F.602, A.605, T.606, T.610, V.613, V.617 Chain D: F.523, L.524, Y.527, L.531, L.575, Q.576, F.579, W.580, V.582, L.620 15 PLIP interactions: 4 interactions with chain C, 11 interactions with chain D Hydrophobic interactions: C:F.602, C:V.613, C:V.613, C:V.617, D:F.523, D:L.524, D:Y.527, D:Y.527, D:L.531, D:F.579, D:F.579, D:F.579, D:V.582, D:L.620 Hydrogen bonds: D:Q.576

Links

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Citation

Chen, Y.K. et al., Structure of human TRPC5 bound with (-)-englerin A, class 2. To Be Published

Release Date

2025-07-02

Peptides

Short transient receptor potential channel 5: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Short transient receptor potential channel 5