SMTL ID : 9mbc.1

Cryo-EM structure of agonist-bound GPCR

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x 01: 2-[(4-bromophenyl)methylsulfanyl]-~{N}-[4-[(2~{S})-butan-2-yl]phenyl]ethanamide

01.1: 10 residues within 4Å: Chain A: W.583, I.793, I.800, I.813, T.816, V.820, S.821 Chain B: A.796, P.799, T.804 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:I.800, A:I.813, A:V.820, B:A.796 Halogen bonds: B:T.804 01.3: 7 residues within 4Å: Chain A: A.796, P.799 Chain B: W.583, I.800, I.813, V.820, S.821 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:I.813, B:V.820, A:A.796, A:P.799

2 x HVG: 4-[(S)-amino(carboxy)methyl]benzene-1,2-dicarboxylic acid(Non-covalent)

HVG.2: 12 residues within 4Å: Chain A: K.71, R.75, A.154, S.156, A.177, S.178, T.179, Y.227, D.309, S.310, K.314, K.401 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.177 Hydrogen bonds: A:S.156, A:A.177, A:T.179 Salt bridges: A:K.71, A:K.71, A:R.75, A:K.314 pi-Cation interactions: A:K.401 HVG.4: 12 residues within 4Å: Chain B: K.71, R.75, A.154, S.156, A.177, S.178, T.179, Y.227, D.309, S.310, K.314, K.401 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.177 Hydrogen bonds: B:S.156, B:A.177, B:T.179 Salt bridges: B:K.71, B:K.71, B:R.75, B:K.314 pi-Cation interactions: B:K.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, J. et al., Structural characterization of five functional states of metabotropic glutamate receptor 8. Mol.Cell (2025)

Release Date

2025-10-01

Peptides

Metabotropic glutamate receptor 8: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Metabotropic glutamate receptor 8

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