SMTL ID : 9mgy.1

Cryo-EM structure of Human NLRP3 complex with compound 1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 17 residues within 4Å: Chain A: Y.168, T.169, L.171, A.228, G.229, G.231, K.232, T.233, I.234, D.302, E.306, F.373, Y.381, P.412, L.413, W.416, H.522 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:T.169, A:T.169, A:G.229, A:G.231, A:K.232, A:T.233, A:T.233, A:I.234, A:E.306, A:E.306, A:Y.381 Salt bridges: A:K.232, A:K.232, A:H.522, A:H.522 pi-Stacking: A:F.373

1 x 01: (2M)-2-(6-{[(3R)-1-methylpiperidin-3-yl]amino}pyridazin-3-yl)-5-(trifluoromethyl)phenol

01.2: 14 residues within 4Å: Chain A: A.227, A.228, I.411, L.413, V.414, T.439, Y.443, I.574, F.575, R.578, Q.624, E.629, Y.632, M.661 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.227, A:I.411, A:T.439, A:Y.632 Hydrogen bonds: A:A.228, A:R.578, A:R.578, A:Q.624 Water bridges: A:A.228, A:D.662 Salt bridges: A:E.629 pi-Stacking: A:F.575

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mammoliti, O. et al., Discovery of Potent and Brain-Penetrant Bicyclic NLRP3 Inhibitors with Peripheral and Central In Vivo Activity. J.Med.Chem. (2025)

Release Date

2025-02-26

Peptides

NACHT, LRR and PYD domains-containing protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

NACHT, LRR and PYD domains-containing protein 3

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