SMTL ID : 9mhb.1

Crystal Structure of Human P38 alpha MAPK In Complex with MW01-14-064SRM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x 01: (5P)-N,N-dimethyl-5-(naphthalen-1-yl)-6-(pyridin-4-yl)pyrazin-2-amine

01.1: 14 residues within 4Å: Chain A: V.40, A.53, V.54, K.55, L.77, I.86, L.106, T.108, H.109, L.110, M.111, S.156, L.169, D.170 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.40, A:A.53, A:K.55, A:L.77, A:L.77, A:I.86, A:L.106, A:T.108 Hydrogen bonds: A:K.55, A:M.111

2 x GG5: 4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDINE(Non-covalent)

GG5.2: 13 residues within 4Å: Chain A: P.193, E.194, L.197, W.199, L.238, P.244, L.248, K.251, I.252, I.261, L.293, D.294, S.295 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:P.193, A:L.197, A:P.244, A:L.248, A:L.248, A:I.252, A:I.261, A:L.293 Hydrogen bonds: A:S.295, A:S.295 Water bridges: A:S.253, A:D.296 pi-Stacking: A:W.199, A:W.199 GG5.3: 8 residues within 4Å: Chain A: M.196, L.197, H.230, I.231, L.234, S.256, A.257, Y.260 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.197, A:L.234, A:Y.260, A:Y.260, A:Y.260 Hydrogen bonds: A:S.256 Halogen bonds: A:H.230

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain A: H.109, K.167 Ligands: PEG.5 4 PLIP interactions: 4 interactions with chain A Water bridges: A:N.161, A:N.161 Salt bridges: A:H.109, A:K.167 ACT.7: 3 residues within 4Å: Chain A: Y.11, E.24, Q.27 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.11 Hydrogen bonds: A:E.24, A:Q.27

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 5 residues within 4Å: Chain A: K.81, H.82, E.83, K.167 Ligands: ACT.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.167 Water bridges: A:K.81, A:E.83

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 2 residues within 4Å: Chain A: A.306, H.314 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., Crystal Structure of Human P38 alpha MAPK In Complex with MW01-14-064SRM. To Be Published

Release Date

2025-01-01

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14