SMTL ID : 9mjl.1

SOS1 IN COMPLEX WITH AN INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

monomer

Ligands

1 x 01: 6-({(1R)-1-[2-methyl-3-(trifluoromethyl)phenyl]ethyl}amino)-8-(oxan-4-yl)-1,3,4,8-tetrahydropyrido[3,4-c][1,6]naphthyridin-9(2H)-one

01.1: 12 residues within 4Å: Chain A: V.313, M.316, N.317, V.321, Y.322, F.328, K.336, L.339, E.340, H.343, E.344, E.347 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.322, A:Y.322, A:F.328, A:F.328, A:L.339, A:L.339, A:E.340, A:H.343 Hydrogen bonds: A:N.317, A:N.317, A:E.347 pi-Stacking: A:H.343, A:H.343 Halogen bonds: A:K.336

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: D.213, L.214, L.215, C.276, T.280, V.289, K.468, Y.469, Y.471 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.213, A:K.468, A:Y.469, A:Y.471 EDO.3: 6 residues within 4Å: Chain A: R.70, S.71, F.72, C.73, K.74, E.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.70, A:K.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leffler, A.E. et al., Exploiting Solvent Exposed Salt-Bridge Interactions for the Discovery of Potent Inhibitors of SOS1 Using Free-Energy Perturbation Simulations. Acs Med.Chem.Lett. (2025)

Release Date

2025-04-02

Peptides

Son of sevenless homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Son of sevenless homolog 1

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