SMTL ID : 9mpw.1

SARS-CoV2 Spike S2 Subunit in complex with M15 Antibody Fragment

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.37 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.445, T.447, H.448, F.450 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.481 No protein-ligand interaction detected (PLIP) NAG.3: 1 residues within 4Å: Chain A: N.421 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.58 NAG.4: 4 residues within 4Å: Chain A: N.64, T.66, L.269, Q.273 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.273 NAG.5: 2 residues within 4Å: Chain A: N.148, Q.151 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.151 NAG.6: 2 residues within 4Å: Chain B: S.19, N.81 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.19, B:N.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sapse, I.A. et al., SARS-CoV2 Spike S2 Subunit in complex with M15 Antibody Fragment. To Be Published

Release Date

2025-07-09

Peptides

Spike protein S2: A
Fab M15 Heavy Chain: B
fAb M15 Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
S

B
H

C
L

Spike protein S2

Fab M15 Heavy Chain

fAb M15 Light Chain

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