SMTL ID : 9mq3.1

Cryo-EM map of H5 HA (A/Jiangsu/NJ210/2023) in complex with monoclonal fab 6G1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.22 Å

Oligo State

hetero-1-1-3-3-mer

Ligands

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain C: N.181, D.252, A.254, H.256 Ligand excluded by PLIP NAG.2: 2 residues within 4Å: Chain C: K.38, N.39 Ligand excluded by PLIP NAG.3: 1 residues within 4Å: Chain C: N.27 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain C: N.54, N.302 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain D: E.150, N.154, T.156 Ligand excluded by PLIP NAG.6: 5 residues within 4Å: Chain B: Y.33 Chain C: S.233 Chain E: N.181, D.252, A.254 Ligand excluded by PLIP NAG.7: 2 residues within 4Å: Chain E: Q.31, N.39 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain E: C.290, N.302 Ligand excluded by PLIP NAG.9: 2 residues within 4Å: Chain E: N.27 Chain F: Q.15 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain F: N.154 Ligand excluded by PLIP NAG.11: 3 residues within 4Å: Chain G: N.181, D.252, A.254 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain G: Q.31, N.39 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain G: N.27 Chain H: Q.15 Ligand excluded by PLIP NAG.14: 4 residues within 4Å: Chain G: N.54, C.290, N.291, N.302 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain H: E.150, N.154, T.156 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pena Alzua, G. et al., Human Monoclonal Antibodies that Target Clade 2.3.4.4b H5N1 Hemagglutinin. To Be Published

Release Date

2025-11-05

Peptides

6G1 Heavy Chain Fab: A
6G1 Light Chain Fab: B
Hemagglutinin HA1: CEG
Hemagglutinin HA2: DFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
B

E
A

G
C

D
b

F
a

H
c

6G1 Heavy Chain Fab

6G1 Light Chain Fab

Hemagglutinin HA1

Hemagglutinin HA2

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