SMTL ID : 9mq5.1

Crystal structure SHP2 tandem SH2 domains in complex with PZR doubly tyrosine phosphorylated ITIM peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: P.14, P.38 No protein-ligand interaction detected (PLIP) EDO.2: 4 residues within 4Å: Chain A: R.28, N.108, C.109, A.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.28 Water bridges: A:R.28 EDO.3: 6 residues within 4Å: Chain A: P.149, G.150, D.151, R.178, C.179, Q.180 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.149 EDO.4: 3 residues within 4Å: Chain A: G.29, V.30, R.51 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.51, A:R.51 Water bridges: A:T.27, A:G.29, A:D.31 EDO.5: 5 residues within 4Å: Chain A: F.46, N.63, Y.68, S.147, P.149 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.63 Water bridges: A:N.63, A:G.65, A:Y.68 EDO.6: 5 residues within 4Å: Chain A: Y.86, M.87, H.90, E.102, L.103 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.86, A:L.103 Water bridges: A:G.91, A:G.91 EDO.7: 2 residues within 4Å: Chain A: R.52, N.53 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perla, S. et al., SHP2 genetic variants in NSML-associated RASopathies disrupt PZR-IRX transcription factor signaling axis. Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-07-30

Peptides

Tyrosine-protein phosphatase non-receptor type 11: A
Myelin protein zero-like protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosine-protein phosphatase non-receptor type 11

Myelin protein zero-like protein 1