9mq6.1 | SWISS-MODEL Template Library

SMTL ID : 9mq6.1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.30 Å

Oligo State

hetero-2-1-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1:	13 residues within 4Å: Chain A: D.478, I.479, G.480, P.520, G.521, C.522, G.523, K.524, T.525, L.526, I.656, N.660, T.688 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.480, A:G.521, A:C.522, A:C.522, A:G.523, A:K.524, A:T.525, A:T.525, A:T.525, A:N.660 Salt bridges: A:K.524
ADP.3:	13 residues within 4Å: Chain B: D.478, I.479, G.480, G.521, C.522, G.523, K.524, T.525, L.526, I.656, N.660, G.684, T.688 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.480, B:G.480, B:G.521, B:C.522, B:G.523, B:K.524, B:T.525, B:T.525, B:T.525, B:L.526, B:N.660 Salt bridges: B:K.524

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2:	10 residues within 4Å: Chain A: D.205, G.207, G.248, T.249, G.250, K.251, T.252, L.253, D.304, H.384 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.207, A:G.207, A:G.248, A:G.248, A:T.249, A:G.250, A:K.251, A:K.251, A:K.251, A:T.252
ANP.4:	17 residues within 4Å: Chain B: D.205, I.206, G.207, P.247, G.248, T.249, G.250, K.251, T.252, L.253, D.304, E.305, N.348, I.380, H.384, G.408, A.409 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.207, B:G.248, B:T.249, B:G.250, B:K.251, B:T.252, B:L.253, B:D.304, B:E.305, B:E.305

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Vostal, L.E. et al., Structural insights into the coupling between VCP, an essential unfoldase, and a deubiquitinase. J.Cell Biol. (2025)

Release Date

2025-03-26

Peptides

Transitional endoplasmic reticulum ATPase: AB
Deubiquitinating protein VCPIP1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C