SMTL ID : 9mt6.1

Structure of the Junin virus glycoprotein complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: L.60, Q.118, N.120, T.124, L.156 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.124 NAG-NAG.2: 11 residues within 4Å: Chain D: N.106, T.108, I.129, N.132, S.133, Y.134 Chain F: M.19, R.143, L.170, D.171, H.172 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 6 residues within 4Å: Chain D: Y.112, N.114, T.116, L.117, H.121 Chain F: Q.13 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain E: N.120, T.124, L.154, L.156 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:T.124, E:L.154 NAG-NAG.5: 5 residues within 4Å: Chain F: Q.118, N.120, T.124, L.154, L.156 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:T.124, F:L.154 NAG-NAG.6: 8 residues within 4Å: Chain A: R.143, D.171, H.172 Chain G: N.106, T.108, I.129, N.132, Y.134 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 6 residues within 4Å: Chain A: Q.13 Chain G: K.32, Y.112, N.114, T.116, H.121 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 9 residues within 4Å: Chain E: M.19, R.143, D.171, H.172 Chain H: N.106, T.108, I.129, N.132, Y.134 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 7 residues within 4Å: Chain E: Q.13 Chain H: K.32, F.34, Y.112, N.114, T.116, H.121 No protein-ligand interaction detected (PLIP)

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 4 residues within 4Å: Chain A: V.66, W.76, N.108, T.110 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.110 NAG.11: 1 residues within 4Å: Chain D: N.131 No protein-ligand interaction detected (PLIP) NAG.12: 1 residues within 4Å: Chain D: N.136 No protein-ligand interaction detected (PLIP) NAG.15: 3 residues within 4Å: Chain E: W.76, N.108, T.110 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:T.110 NAG.16: 3 residues within 4Å: Chain F: W.76, N.108, T.110 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:T.110, F:T.110 NAG.17: 1 residues within 4Å: Chain G: N.131 No protein-ligand interaction detected (PLIP) NAG.20: 1 residues within 4Å: Chain H: N.131 No protein-ligand interaction detected (PLIP)

6 x ZN: ZINC ION(Non-covalent)

ZN.13: 4 residues within 4Å: Chain B: C.57 Chain D: H.208, C.216, C.218 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain B Metal complexes: D:H.208, D:H.208, D:C.216, D:C.218, B:C.57 ZN.14: 5 residues within 4Å: Chain D: H.196, H.198, C.204, L.206, H.234 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.196, D:H.198, D:C.204, D:H.234 ZN.18: 4 residues within 4Å: Chain C: C.57 Chain G: H.208, C.216, C.218 5 PLIP interactions: 4 interactions with chain G, 1 interactions with chain C Metal complexes: G:H.208, G:H.208, G:C.216, G:C.218, C:C.57 ZN.19: 5 residues within 4Å: Chain G: H.196, H.198, C.204, L.206, H.234 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.196, G:H.198, G:C.204, G:H.234 ZN.21: 4 residues within 4Å: Chain H: H.208, C.216, C.218 Chain I: C.57 5 PLIP interactions: 4 interactions with chain H, 1 interactions with chain I Metal complexes: H:H.208, H:H.208, H:C.216, H:C.218, I:C.57 ZN.22: 4 residues within 4Å: Chain H: H.196, H.198, C.204, H.234 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:H.196, H:H.198, H:C.204, H:H.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mann, C.J. et al., Structure of the Junin virus glycoprotein complex. To Be Published

Release Date

2025-07-16

Peptides

JUNV GP1: AEF
Pre-glycoprotein polyprotein GP complex: BCI
JUNV GP2: DGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E
E

F
H

B
D

C
G

I
A

D
I

G
C

H
F

Membrane

We predict this structure to be a membrane protein.
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JUNV GP1

Pre-glycoprotein polyprotein GP complex

JUNV GP2

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