SMTL ID : 9mxi.3 (2 other biounits)

Crystal Structure of synthetic antibody, COP-2, in complex with the C-terminal domain of Clostridium perfringens Enterotoxin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: N.77, N.80 Chain B: S.58, R.124 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.124, B:R.124, A:N.77, A:N.80 GOL.2: 12 residues within 4Å: Chain B: F.205, P.206, V.208, S.216, L.217, S.218 Chain C: Q.185, E.186, S.187, S.201, S.202, T.203 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:S.187, C:S.201, B:P.206, B:S.218, B:S.218 GOL.3: 2 residues within 4Å: Chain C: R.90, G.92 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.90, C:G.92 GOL.4: 9 residues within 4Å: Chain C: Q.61, K.63, L.71, V.82, P.83, R.85, F.86, E.105, D.106 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Q.61, C:K.63, C:R.85, C:E.105, C:D.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ogbu, C.P. et al., Crystal Structure of synthetic antibody, COP-2, in complex with the C-terminal domain of Clostridium perfringens Enterotoxin. To Be Published

Release Date

2025-02-12

Peptides

Heat-labile enterotoxin B chain: A
COP-2 antibody heavy chain: B
COP-2 antibody light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
E

C
F

Heat-labile enterotoxin B chain

COP-2 antibody heavy chain

COP-2 antibody light chain

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