SMTL ID : 9mxj.1 (1 other biounit)

Human Vault Cage in complex with ADP-ribose

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.1: 18 residues within 4Å: Chain A: R.437, L.500, A.502, G.503, R.504, K.506, R.511, A.513, C.515, L.516, L.517, D.521, F.522, F.523, T.524, W.545, F.567, V.568 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.437, A:R.437, A:G.503, A:R.504, A:L.517, A:D.521, A:T.524, A:T.524 Salt bridges: A:R.437, A:K.506, A:K.506, A:R.511 APR.2: 18 residues within 4Å: Chain B: R.437, L.500, A.502, G.503, R.504, K.506, R.511, A.513, C.515, L.516, L.517, D.521, F.522, F.523, T.524, W.545, F.567, V.568 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:R.437, B:R.437, B:G.503, B:R.504, B:L.517, B:D.521, B:D.521, B:T.524, B:T.524 Salt bridges: B:R.437, B:K.506, B:K.506, B:R.511

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lodwick, J.E. et al., Structural insights into the roles of PARP4 and NAD + binding in the human vault cage. Nat Commun (2025)

Release Date

2025-08-06

Peptides

Major vault protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Major vault protein

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