SMTL ID : 9mza.1

Chemically Hijacked BCL6-TCIP3-p300 Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 01: 1-{1-[5-({1-[5-chloro-4-({8-methoxy-1-methyl-3-[2-(methylamino)-2-oxoethoxy]-2-oxo-1,2-dihydroquinolin-6-yl}amino)pyrimidin-2-yl]piperidine-4-carbonyl}amino)pentanoyl]piperidin-4-yl}-3-[(6M)-7-(difluoromethyl)-6-(1-methyl-1H-pyrazol-4-yl)-3,4-dihydroquinolin-1(2H)-yl]-N-methyl-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide

01.1: 29 residues within 4Å: Chain A: M.50, A.51, C.52, S.53, G.54, Y.57, F.88, Q.112, M.113, E.114, H.115, V.116 Chain B: P.54, L.57, P.58, F.59, V.63, L.68, G.69, I.70, A.112, N.116, R.121, V.122, Y.125 Chain C: F.10, N.20, R.23, L.24 22 PLIP interactions: 6 interactions with chain C, 8 interactions with chain A, 8 interactions with chain B Hydrogen bonds: C:R.23, A:M.50, A:E.114, A:H.115, A:V.116, B:P.58, B:G.69, B:N.116 Water bridges: C:H.13, C:D.16, C:N.20, C:R.27, C:R.27, A:Y.57, A:Q.112, B:Y.125 Hydrophobic interactions: A:Y.57, B:P.58, B:L.68, B:I.70, B:I.70 pi-Stacking: A:Y.57 01.2: 29 residues within 4Å: Chain A: F.10, N.20, R.23, L.24 Chain C: M.50, A.51, C.52, S.53, G.54, Y.57, F.88, Q.112, M.113, E.114, H.115, V.116 Chain D: P.54, L.57, P.58, F.59, V.63, L.68, G.69, I.70, A.112, N.116, R.121, V.122, Y.125 19 PLIP interactions: 8 interactions with chain D, 7 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: D:L.57, D:P.58, D:L.68, D:I.70, D:I.70, C:Y.57 Hydrogen bonds: D:P.58, D:G.69, D:N.116, C:M.50, C:Y.57, C:E.114, C:H.115, C:V.116, A:R.23 pi-Stacking: C:Y.57 Water bridges: A:H.13, A:N.20, A:N.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nix, M.N. et al., A Bivalent Molecular Glue Linking Lysine Acetyltransferases to Oncogene-induced Cell Death. Biorxiv (2025)

Release Date

2025-04-16

Peptides

B-cell lymphoma 6 protein: AC
Histone acetyltransferase p300: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

B-cell lymphoma 6 protein

Histone acetyltransferase p300