SMTL ID : 9n0j.1

Crystal structure of KABLE double mutant (Lys14Pro, Leu20Trp) in complex with 6-nitrobenzotriazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

3 x 3NY: 5-nitro-1H-benzotriazole(Non-covalent)

3NY.1: 11 residues within 4Å: Chain A: L.72, E.75, R.79, A.115, P.118, L.119, A.122 Ligands: 3NY.2, CAC.4, ZN.5, ZN.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.119, A:A.122 3NY.2: 9 residues within 4Å: Chain A: E.68, L.72, A.122, E.125, A.126 Ligands: 3NY.1, CAC.4, ZN.5, ZN.7 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.125 3NY.3: 15 residues within 4Å: Chain A: Y.10, G.14, I.17, L.18, W.21, F.47, D.50, Q.76, L.80, I.83, G.113, K.114, L.116, L.117, V.120 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.116, A:L.116, A:L.117 Hydrogen bonds: A:D.50, A:Q.76 Water bridges: A:G.14, A:G.14

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.4: 8 residues within 4Å: Chain A: E.68, A.71, L.72, E.75 Ligands: 3NY.1, 3NY.2, ZN.5, ZN.8 No protein-ligand interaction detected (PLIP)

4 x ZN: ZINC ION(Non-functional Binders)(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: L.72 Ligands: 3NY.1, 3NY.2, CAC.4 No protein-ligand interaction detected (PLIP) ZN.6: 1 residues within 4Å: Chain A: E.63 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.63, A:E.63, H2O.2 ZN.7: 3 residues within 4Å: Chain A: A.122, E.125 Ligands: 3NY.2 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.125, H2O.1 ZN.8: 3 residues within 4Å: Chain A: E.75 Ligands: 3NY.1, CAC.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.75, A:E.75, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Correy, G.J. et al., De novo designed KABLE protein. To Be Published

Release Date

2025-08-20

Peptides

De novo designed KABLE protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

De novo designed KABLE protein