SMTL ID : 9n2o.1

Crystal Structure of Human DAPK1 Catalytic Subunit Complexed with Compound MW01-27-040SRM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x 01: 5-(pyridin-4-yl)-3-[4-(pyrimidin-2-yl)piperazin-1-yl]pyridazine

01.1: 12 residues within 4Å: Chain A: L.18, V.26, A.39, K.41, E.93, L.94, V.95, E.99, E.142, N.143, M.145, I.159 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.39, A:I.159 Hydrogen bonds: A:V.95 Water bridges: A:D.160

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.62, H.165, K.174 4 PLIP interactions: 4 interactions with chain A Water bridges: A:E.58, A:R.62 Salt bridges: A:R.62, A:K.174 SO4.3: 3 residues within 4Å: Chain A: F.235, K.248, R.252 4 PLIP interactions: 4 interactions with chain A Water bridges: A:F.235, A:K.248 Salt bridges: A:K.248, A:R.252 SO4.4: 4 residues within 4Å: Chain A: S.50, S.51, R.52, R.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.52, A:R.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brunzelle, J.S. et al., Crystal Structure of Human DAPK1 Catalytic Subunit Complexed with Compound MW01-27-040SRM. To Be Published

Release Date

2025-04-02

Peptides

Death-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Death-associated protein kinase 1

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