SMTL ID : 9n7d.1

Structure of the Rattus norvegicus ACE2 receptor bound HsItaly2011 RBD complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.53, N.58, R.340 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: S.420, D.543, S.545, N.546 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: F.285, N.432, I.436, W.594 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain B: N.49, L.176, T.179 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 4 residues within 4Å: Chain A: N.90, A.91, T.92 Chain B: Y.159 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.91 Hydrogen bonds: A:T.92, A:T.92 NAG.6: 2 residues within 4Å: Chain A: N.690, D.693 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.690 NAG.7: 1 residues within 4Å: Chain A: N.82 No protein-ligand interaction detected (PLIP) NAG.9: 3 residues within 4Å: Chain B: N.61, K.64, P.229 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.61 NAG.10: 1 residues within 4Å: Chain B: N.138 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.8: 3 residues within 4Å: Chain A: H.374, H.378, E.402 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.374, A:H.378, A:E.402, A:E.402

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, C. et al., ACE2 utilization of HKU25 clade MERS-related coronaviruses with broad geographic distribution. Biorxiv (2025)

Release Date

2025-08-27

Peptides

Angiotensin-converting enzyme 2: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Angiotensin-converting enzyme 2

Spike glycoprotein