SMTL ID : 9nbx.1

Crystal structure of PAK1 bound to C2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x 01: (6M)-8-(3-aminopropyl)-6-(4-butoxy-2-methylphenyl)-2-(methylamino)pyrido[2,3-d]pyrimidin-7(8H)-one

01.1: 21 residues within 4Å: Chain A: I.265, V.273, A.286, I.287, K.288, I.301, E.304, I.305, M.308, V.317, V.331, M.333, E.334, Y.335, L.336, A.337, G.339, D.382, L.385, T.395, D.396 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.331, A:L.385 Hydrogen bonds: A:L.336, A:L.336, A:D.382 01.3: 23 residues within 4Å: Chain B: I.265, V.273, A.286, I.287, K.288, M.290, I.301, E.304, I.305, M.308, V.317, V.331, M.333, E.334, Y.335, L.336, A.337, G.339, D.382, L.385, T.395, D.396 Ligands: DMS.2 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.273, B:A.286, B:I.305, B:L.385 Hydrogen bonds: B:K.288, B:L.336, B:L.336

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 8 residues within 4Å: Chain B: M.308, V.317, M.333, T.395, D.396, F.397, F.399 Ligands: 01.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walters, B.T. et al., Integrating Hydrogen Exchange with Molecular Dynamics for Improved Ligand Binding Predictions. J.Chem.Inf.Model. (2025)

Release Date

2025-06-25

Peptides

Glutathione S-transferase class-mu 26 kDa isozyme,Serine/threonine-protein kinase PAK 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione S-transferase class-mu 26 kDa isozyme,Serine/threonine-protein kinase PAK 1

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