SMTL ID : 9ncz.1

Crystal structure of human AlkBH3 in complex with manganese and 2-oxoglutarate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.155, D.157, H.221 Ligands: AKG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.155, A:D.157, A:H.221, H2O.3

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 15 residues within 4Å: Chain A: L.141, N.143, Y.145, H.155, D.157, S.170, F.179, L.203, H.221, V.223, R.233, N.235, T.237, R.239 Ligands: MN.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.223 Hydrogen bonds: A:N.143, A:Y.145, A:S.170 Water bridges: A:N.235, A:R.239 Salt bridges: A:H.155, A:R.233, A:R.239

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: R.86, Y.91, P.94, R.95, V.152, D.153 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suma, K. et al., Crystal structure of human AlkBH3 in complex with manganese and 2-oxoglutarate. To Be Published

Release Date

2025-03-12

Peptides

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3