SMTL ID : 9nmr.1

Structure of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.4956, C.4959, H.4976, H.4981 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.4956, A:C.4959, A:H.4976, A:H.4981 ZN.4: 4 residues within 4Å: Chain F: C.4956, C.4959, H.4976, H.4981 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.4956, F:C.4959, F:H.4976, F:H.4981 ZN.7: 4 residues within 4Å: Chain G: C.4956, C.4959, H.4976, H.4981 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.4956, G:C.4959, G:H.4976, G:H.4981 ZN.11: 4 residues within 4Å: Chain H: C.4956, C.4959, H.4976, H.4981 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.4956, H:C.4959, H:H.4976, H:H.4981

8 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PCW.2: 12 residues within 4Å: Chain A: L.4848, Y.4849, V.4852, N.4855, F.4856, F.4857, Y.4907, Y.4910, F.4921 Chain G: R.4318 Chain H: Y.4628 Ligands: PCW.10 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.4848, A:L.4848, A:Y.4849, A:Y.4849, A:V.4852, A:F.4856, A:F.4856, A:F.4856, A:F.4856, A:F.4857, A:F.4921, A:F.4921 Hydrogen bonds: A:Y.4907 PCW.3: 9 residues within 4Å: Chain A: W.4792, Y.4802, N.4803, F.4806, L.4812 Chain F: L.4848, N.4855, F.4856 Ligands: PCW.5 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain F Hydrophobic interactions: A:F.4806, A:F.4806, A:L.4812, F:L.4848 Hydrogen bonds: A:N.4803 PCW.5: 12 residues within 4Å: Chain A: Y.4628 Chain F: L.4848, Y.4849, V.4852, N.4855, F.4856, F.4857, Y.4907, Y.4910, F.4921 Chain H: R.4318 Ligands: PCW.3 13 PLIP interactions: 13 interactions with chain F Hydrophobic interactions: F:L.4848, F:L.4848, F:Y.4849, F:Y.4849, F:V.4852, F:F.4856, F:F.4856, F:F.4856, F:F.4856, F:F.4857, F:F.4921, F:F.4921 Hydrogen bonds: F:Y.4907 PCW.6: 9 residues within 4Å: Chain F: W.4792, Y.4802, N.4803, F.4806, L.4812 Chain G: L.4848, N.4855, F.4856 Ligands: PCW.8 5 PLIP interactions: 4 interactions with chain F, 1 interactions with chain G Hydrophobic interactions: F:F.4806, F:F.4806, F:L.4812, G:L.4848 Hydrogen bonds: F:N.4803 PCW.8: 12 residues within 4Å: Chain A: R.4318 Chain F: Y.4628 Chain G: L.4848, Y.4849, V.4852, N.4855, F.4856, F.4857, Y.4907, Y.4910, F.4921 Ligands: PCW.6 13 PLIP interactions: 13 interactions with chain G Hydrophobic interactions: G:L.4848, G:L.4848, G:Y.4849, G:Y.4849, G:V.4852, G:F.4856, G:F.4856, G:F.4856, G:F.4856, G:F.4857, G:F.4921, G:F.4921 Hydrogen bonds: G:Y.4907 PCW.9: 9 residues within 4Å: Chain G: W.4792, Y.4802, N.4803, F.4806, L.4812 Chain H: L.4848, N.4855, F.4856 Ligands: PCW.12 5 PLIP interactions: 4 interactions with chain G, 1 interactions with chain H Hydrophobic interactions: G:F.4806, G:F.4806, G:L.4812, H:L.4848 Hydrogen bonds: G:N.4803 PCW.10: 9 residues within 4Å: Chain A: L.4848, N.4855, F.4856 Chain H: W.4792, Y.4802, N.4803, F.4806, L.4812 Ligands: PCW.2 5 PLIP interactions: 4 interactions with chain H, 1 interactions with chain A Hydrophobic interactions: H:F.4806, H:F.4806, H:L.4812, A:L.4848 Hydrogen bonds: H:N.4803 PCW.12: 12 residues within 4Å: Chain F: R.4318 Chain G: Y.4628 Chain H: L.4848, Y.4849, V.4852, N.4855, F.4856, F.4857, Y.4907, Y.4910, F.4921 Ligands: PCW.9 13 PLIP interactions: 13 interactions with chain H Hydrophobic interactions: H:L.4848, H:L.4848, H:Y.4849, H:Y.4849, H:V.4852, H:F.4856, H:F.4856, H:F.4856, H:F.4856, H:F.4857, H:F.4921, H:F.4921 Hydrogen bonds: H:Y.4907

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weninger, G., Structural basis for statin-induced skeletal muscle weakness. To Be Published

Release Date

2025-10-08

Peptides

Ryanodine receptor 1: AFGH
Peptidyl-prolyl cis-trans isomerase FKBP1A: BCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
B

G
C

H
D

B
E

C
F

D
G

E
H

Membrane

We predict this structure to be a membrane protein.
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Ryanodine receptor 1

Peptidyl-prolyl cis-trans isomerase FKBP1A

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