SMTL ID : 9nvu.1

Engineered OrufIscB-omegaRNA-target DNA complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain A: T.9 Chain B: D.60, H.445 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.60, B:H.445 MG.2: 6 residues within 4Å: Chain A: C.8, T.9 Chain B: D.60, P.61, E.295, N.297 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.60, B:E.295 MG.5: 6 residues within 4Å: Chain B: H.351, H.352, H.375, H.379 Chain C: G.19, A.20 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.375 MG.6: 1 residues within 4Å: Chain D: A.89 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain B: C.339, C.342, E.345, C.371, C.374 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.342, B:C.371, B:C.374 ZN.4: 6 residues within 4Å: Chain B: C.158, V.160, C.161, C.245, E.247, H.248 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.158, B:C.161, B:C.245, B:H.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kannan, S. et al., Evolution-guided protein design of IscB for persistent epigenome editing in vivo. Nat.Biotechnol. (2025)

Release Date

2025-05-21

Peptides

OrufIscB-REC-swap 49: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
P

OrufIscB-REC-swap 49