SMTL ID : 9nwp.1

Human delta 2 receptor activated by D-serine

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.69 Å

Oligo State

homo-tetramer

Ligands

4 x DSN: D-SERINE(Non-covalent)

DSN.1: 9 residues within 4Å: Chain A: A.497, L.498, T.499, Y.517, A.660, V.661, W.715, D.716, Y.744 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:A.497, A:A.497, A:T.499, A:T.499, A:Y.517, A:Y.517, A:A.660 Salt bridges: A:R.504 DSN.2: 7 residues within 4Å: Chain B: Y.470, A.497, T.499, R.504, S.659, A.660, V.661 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.499, B:T.499, B:T.499, B:T.499, B:A.660, B:V.661 Salt bridges: B:R.504 DSN.3: 9 residues within 4Å: Chain C: A.497, L.498, T.499, R.504, Y.517, A.660, V.661, W.715, D.716 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:A.497, C:T.499, C:T.499, C:T.499, C:Y.517, C:Y.517, C:A.660 Salt bridges: C:R.504 DSN.4: 9 residues within 4Å: Chain D: Y.470, A.497, L.498, T.499, R.504, Y.517, A.660, W.715, D.716 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:A.497, D:T.499, D:T.499, D:T.499, D:Y.517, D:A.660 Salt bridges: D:R.504

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Delta-type glutamate receptors are ligand-gated ion channels. Nature (2025)

Release Date

2025-09-24

Peptides

Glutamate receptor ionotropic, delta-2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Glutamate receptor ionotropic, delta-2

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