SMTL ID : 9o43.1

Crystal structure of the L411A mutant of pregnane X receptor ligand binding domain in complex with SJPYT-331

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.76 Å

Oligo State

homo-dimer

Ligands

2 x WU6: methyl 3-{[(1P)-1-(2,5-dimethoxyphenyl)-5-methyl-1H-1,2,3-triazole-4-carbonyl]amino}-4-{[(3S)-hexan-3-yl]oxy}benzoate(Non-covalent)

WU6.1: 19 residues within 4Å: Chain A: L.91, V.93, L.121, L.122, M.125, S.129, F.133, A.162, F.163, C.166, Q.167, F.170, W.181, Y.188, M.205, H.289, T.290, L.310, F.311 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.93, A:V.93, A:F.163, A:F.170, A:F.170, A:W.181, A:Y.188, A:Y.188, A:F.311 Hydrogen bonds: A:Q.167 WU6.2: 19 residues within 4Å: Chain B: L.91, V.93, L.121, L.122, M.125, S.129, F.133, F.163, Q.167, F.170, W.181, Y.188, M.205, H.209, H.289, T.290, A.293, L.310, F.311 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.93, B:F.170, B:W.181, B:W.181, B:W.181, B:Y.188, B:L.310, B:F.311, B:F.311 Hydrogen bonds: B:S.129, B:Q.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huber, A.D. et al., Subtle changes in ligand-receptor interactions dramatically alter transcriptional outcomes of pregnane X receptor modulators. Structure (2025)

Release Date

2025-11-05

Peptides

Pregnane X receptor ligand binding domain tethered to steroid receptor coactivator-1 peptide: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pregnane X receptor ligand binding domain tethered to steroid receptor coactivator-1 peptide

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