SMTL ID : 9o45.1

Crystal structure of the L411W mutant of pregnane X receptor ligand binding domain in complex with SJPYT-328

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

homo-dimer

Ligands

2 x WU2: (1P)-N-(5-tert-butyl-2-{[(3S)-hexan-3-yl]oxy}phenyl)-1-(2,4-dimethoxy-5-methylphenyl)-5-methyl-1H-1,2,3-triazole-4-carboxamide(Non-covalent)

WU2.1: 17 residues within 4Å: Chain A: L.91, V.93, L.122, M.125, S.129, F.133, A.162, F.163, Q.167, F.170, W.181, C.183, Y.188, H.289, M.307, L.310, F.311 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.93, A:L.122, A:F.133, A:A.162, A:F.163, A:F.170, A:F.170, A:W.181, A:W.181, A:Y.188, A:F.311 Hydrogen bonds: A:Q.167 WU2.2: 18 residues within 4Å: Chain B: L.88, L.91, V.93, L.122, M.125, S.129, F.133, A.162, F.163, Q.167, F.170, W.181, Y.188, M.205, H.289, W.293, L.310, F.311 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.91, B:L.91, B:V.93, B:L.122, B:F.133, B:A.162, B:F.163, B:F.170, B:W.181, B:Y.188, B:F.311 Hydrogen bonds: B:S.129, B:Q.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huber, A.D. et al., Subtle changes in ligand-receptor interactions dramatically alter transcriptional outcomes of pregnane X receptor modulators. Structure (2025)

Release Date

2025-11-05

Peptides

Pregnane X receptor ligand binding domain tethered to steroid receptor coactivator-1 peptide: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pregnane X receptor ligand binding domain tethered to steroid receptor coactivator-1 peptide

Related Entries With Identical Sequence