SMTL ID : 9o58.1

Zymogen ADAM17-iRhom2 complex bound by the MEDI3622 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.53 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.512, T.538 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.470, N.471 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain A: N.524, S.525 No protein-ligand interaction detected (PLIP) NAG.4: 1 residues within 4Å: Chain A: N.130 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.130 NAG.5: 3 residues within 4Å: Chain A: R.99, N.237, K.246 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.246, A:K.246 NAG.6: 1 residues within 4Å: Chain A: N.425 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.425 NAG.7: 3 residues within 4Å: Chain A: N.567, E.568, R.583 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.568 Hydrogen bonds: A:R.583, A:R.583

1 x CA: CALCIUM ION(Non-covalent)

CA.8: 8 residues within 4Å: Chain A: V.450, C.451, G.452, N.453, R.455, D.457, E.460, D.463 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:V.450, A:R.455, A:E.460, A:D.463

1 x ZN: ZINC ION(Non-covalent)

ZN.9: 5 residues within 4Å: Chain A: C.157, H.378, H.382, H.388, M.408 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.157, A:H.378, A:H.382, A:H.388, A:H.388

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maciag, J.J. et al., Structural insights into the activation and inhibition of the ADAM17-iRhom2 complex. Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-06-25

Peptides

Disintegrin and metalloproteinase domain-containing protein 17: A
GFP-iRhom2 fusion protein: B
MEDI3622 Fab Light Chain: C
MEDI3622 Fab Heavy Chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Disintegrin and metalloproteinase domain-containing protein 17

GFP-iRhom2 fusion protein

MEDI3622 Fab Light Chain

MEDI3622 Fab Heavy Chain

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