SMTL ID : 9ob5.1

CDK2/CyclinE bound to compound 20 with P-loop in the EE and CC conformations

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: (1R,3R)-3-{3-[3-(pyridin-3-yl)propanamido]-1H-pyrazol-5-yl}cyclopentyl (1-methylcyclopropyl)carbamate

01.1: 15 residues within 4Å: Chain A: E.11, I.13, V.21, A.34, K.36, V.67, F.83, E.84, F.85, L.86, H.87, Q.134, N.135, L.137, D.148 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.13, A:V.21, A:A.34, A:V.67, A:F.83, A:F.83, A:F.83, A:L.137 Hydrogen bonds: A:K.36, A:L.86, A:L.86, A:D.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Douthwaite, J.L. et al., Nanoscale direct-to-biology optimization of Cdk2 inhibitors. To Be Published

Release Date

2025-04-30

Peptides

Cyclin-dependent kinase 2: A
G1/S-specific cyclin-E1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclin-dependent kinase 2

G1/S-specific cyclin-E1

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