SMTL ID : 9obp.1

Cryo-EM structure of alpha-synuclein filaments derived from the frontal cortex of the case of atypical multiple system atrophy

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-10-mer

Ligands

5 x UNK- UNK- UNK- UNK- UNK: Unidentified protein(Non-covalent)

UNK-UNK-UNK-UNK-UNK.1: 8 residues within 4Å: Chain A: Q.62, T.64 Chain B: Q.62 Ligands: UNK-UNK-UNK-UNK-UNK.2, UNK-UNK-UNK-UNK-UNK.2, UNK-UNK-UNK-UNK-UNK.2, UNK-UNK-UNK-UNK-UNK.2, UNK-UNK-UNK-UNK-UNK.2 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.62, A:Q.62 Hydrophobic interactions: A:T.64 UNK-UNK-UNK-UNK-UNK.2: 12 residues within 4Å: Chain B: Q.62, T.64 Chain C: Q.62 Ligands: UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK.1, UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK.3 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:T.64 Hydrogen bonds: B:Q.62, C:Q.62 UNK-UNK-UNK-UNK-UNK.3: 12 residues within 4Å: Chain C: Q.62, T.64 Chain D: Q.62 Ligands: UNK-UNK-UNK-UNK-UNK.2, UNK-UNK-UNK-UNK-UNK.2, UNK-UNK-UNK-UNK-UNK.2, UNK-UNK-UNK-UNK-UNK.2, UNK-UNK-UNK-UNK-UNK.4, UNK-UNK-UNK-UNK-UNK.4, UNK-UNK-UNK-UNK-UNK.4, UNK-UNK-UNK-UNK-UNK.4, UNK-UNK-UNK-UNK-UNK.4 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:Q.62, C:Q.62 Hydrophobic interactions: C:T.64 UNK-UNK-UNK-UNK-UNK.4: 12 residues within 4Å: Chain D: Q.62, T.64 Chain E: Q.62 Ligands: UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK.3, UNK-UNK-UNK-UNK-UNK.5, UNK-UNK-UNK-UNK-UNK.5, UNK-UNK-UNK-UNK-UNK.5, UNK-UNK-UNK-UNK-UNK.5, UNK-UNK-UNK-UNK-UNK.5 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain E Hydrophobic interactions: D:T.64 Hydrogen bonds: D:Q.62, D:Q.62, E:Q.62 UNK-UNK-UNK-UNK-UNK.5: 5 residues within 4Å: Chain E: Q.62 Ligands: UNK-UNK-UNK-UNK-UNK.4, UNK-UNK-UNK-UNK-UNK.4, UNK-UNK-UNK-UNK-UNK.4, UNK-UNK-UNK-UNK-UNK.4 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:Q.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Enomoto, M. et al., Lewy-MSA hybrid fold drives distinct neuronal alpha-synuclein pathology. Commun Biol (2025)

Release Date

2025-06-25

Peptides

Alpha-synuclein: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Alpha-synuclein

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