SMTL ID : 9og8.1

Crystal structure of WRN in complex with compound 43

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

1 x 01: (3R,4S)-N-[(2R)-3-cyclohexyl-1-(methylamino)-1-oxopropan-2-yl]-4-{3-[6-(ethanesulfonamido)-2-oxo-2,3-dihydro-1H-1,3-benzimidazol-1-yl]propanamido}-1-[(2-fluoro-4-methylphenyl)acetyl]piperidine-3-carboxamide

01.1: 21 residues within 4Å: Chain A: V.30, K.33, A.184, S.185, S.186, R.189, I.203, T.204, C.205, T.206, F.208, D.209, R.210, Y.327, Q.328, I.330, G.331, R.332, R.335, R.388, F.395 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:V.30, A:T.206, A:F.208, A:F.208, A:Y.327, A:Y.327, A:Y.327, A:Q.328, A:I.330, A:R.335, A:R.388, A:F.395 Hydrogen bonds: A:R.189, A:C.205, A:C.205, A:R.210, A:G.331, A:R.335 Water bridges: A:S.185, A:Q.328 pi-Cation interactions: A:R.335

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.386, C.413, C.414, C.417 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.386, A:C.413, A:C.414, A:C.417

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tong, Y. et al., Validation, Key Pharmacophores, and X-ray Cocrystal Structures of Novel Biochemically and Cellularly Active WRN Inhibitors Derived from a DNA-Encoded Library Screen. J.Med.Chem. (2025)

Release Date

2025-06-18

Peptides

Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN

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