SMTL ID : 9ore.1

CryoEM structure of 4F11 Fab bound to stabilized MPV-2c HMPV preF

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 22 residues within 4Å: Chain A: F.137, K.140, N.141, K.157, M.158, S.161, F.165 Chain B: D.44, G.45, P.46, K.151, D.153 Chain E: R.30, H.31, D.32, N.33, G.34, Y.35, N.36, G.71, S.72, G.73 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain B Hydrogen bonds: E:R.30, E:N.36, E:G.71, E:S.72, B:K.151, E:R.30, E:R.30, B:D.153

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 10 residues within 4Å: Chain B: F.138, K.141, N.142, K.158, M.159, S.162 Chain C: D.44, G.45, P.46, L.48 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.44

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: D.35, N.38 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:D.35 NAG.4: 3 residues within 4Å: Chain B: D.36, E.38, N.39 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:D.36 NAG.5: 7 residues within 4Å: Chain A: P.45 Chain C: F.139, K.142, N.143, R.146, K.159, M.160 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:P.45 Hydrogen bonds: C:R.146, C:K.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harris, E.D. et al., DEVELOPMENT OF A POTENT MONOCLONAL ANTIBODY FOR TREATMENT OF HUMAN METAPNEUMOVIRUS INFECTIONS. Biorxiv (2025)

Release Date

2025-07-30

Peptides

Fusion glycoprotein F0: A
Fusion glycoprotein F0: B
Fusion glycoprotein F0: C
4F11 Heavy Chain: D
4F11 Light Chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
H

E
L

Fusion glycoprotein F0

Fusion glycoprotein F0

Fusion glycoprotein F0

4F11 Heavy Chain

4F11 Light Chain