SMTL ID : 9p07.1

Cryo-EM structure of S. Mansoni p97 bound to compound 804

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.76 Å

Oligo State

homo-hexamer

Ligands

6 x 01: (2Z)-N-[2-(3-methylpyridin-2-yl)-1,3-benzoxazol-5-yl]-3-(pyridin-4-yl)prop-2-enamide

01.1: 12 residues within 4Å: Chain A: P.553, G.554, C.555, T.558, L.559, K.562, A.718, D.719, S.778 Chain E: L.667, R.668, P.669 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E Hydrophobic interactions: A:T.558, E:P.669 01.2: 13 residues within 4Å: Chain B: P.553, G.554, C.555, T.558, L.559, K.562, A.718, D.719, E.722, S.778 Chain C: L.667, R.668, P.669 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:R.668, B:T.558 01.3: 13 residues within 4Å: Chain C: P.553, G.554, C.555, T.558, L.559, K.562, A.718, D.719, E.722, S.778 Chain F: L.667, R.668, P.669 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain C Hydrophobic interactions: F:R.668, C:T.558 01.4: 13 residues within 4Å: Chain A: L.667, R.668, P.669 Chain D: P.553, G.554, C.555, T.558, L.559, K.562, A.718, D.719, E.722, S.778 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.778 01.5: 13 residues within 4Å: Chain B: L.667, R.668, P.669 Chain E: P.553, G.554, C.555, T.558, L.559, K.562, A.718, D.719, E.722, S.778 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain B Hydrophobic interactions: E:L.559, B:R.668 01.6: 13 residues within 4Å: Chain D: L.667, R.668, P.669 Chain F: P.553, G.554, C.555, T.558, L.559, K.562, A.718, D.719, E.722, S.778 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D Hydrophobic interactions: F:T.558, D:R.668

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stephens, D.R. et al., Leveraging the Human Druggable Genome to Uncover Therapeutic Targets in the Human Parasite Schistosoma mansoni. Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-08-13

Peptides

vesicle-fusing ATPase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
F

E
B

F
E

vesicle-fusing ATPase

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