SMTL ID : 9p0f.1

Crystal Structure of the C-terminal Cytoplasmic Domain of nsp4 from SARS-CoV-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-hexamer

Ligands

8 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: G.1, D.25, L.28 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.1, A:L.28 NA.2: 4 residues within 4Å: Chain A: T.53, S.88, Q.92 Chain D: E.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.53 NA.3: 3 residues within 4Å: Chain B: G.1, D.25, L.28 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.1, B:G.1 NA.4: 3 residues within 4Å: Chain C: G.1, D.25, L.28 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.1, C:D.25 NA.5: 3 residues within 4Å: Chain D: G.1, D.25, L.28 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.1, D:G.1 NA.6: 4 residues within 4Å: Chain A: E.6 Chain D: T.53, S.88, Q.92 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:E.6, D:T.53 NA.7: 3 residues within 4Å: Chain E: G.1, D.25, L.28 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:G.1, E:D.25 NA.8: 3 residues within 4Å: Chain F: G.1, D.25, L.28 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:G.1, F:G.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., Crystal Structure of the C-terminal Cytoplasmic Domain of nsp4 from SARS-CoV-2. To Be Published

Release Date

2025-06-25

Peptides

Non-structural protein 4: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Non-structural protein 4