SMTL ID : 9p3x.1

Structure of the ANDV dimer of tetramer at conformation I

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-8-8-mer

Ligands

8 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 12 residues within 4Å: Chain A: L.49, N.138, Q.139, T.140, H.141, A.320, G.321, V.322, P.323 Chain B: G.248, F.249, V.254 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.49 NAG-NAG-BMA-MAN-MAN.5: 12 residues within 4Å: Chain C: L.49, N.138, Q.139, T.140, H.141, A.320, G.321, V.322, P.323 Chain D: G.248, F.249, V.254 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:L.49 NAG-NAG-BMA-MAN-MAN.9: 12 residues within 4Å: Chain E: L.49, N.138, Q.139, T.140, H.141, A.320, G.321, V.322, P.323 Chain F: G.248, F.249, V.254 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:L.49 NAG-NAG-BMA-MAN-MAN.13: 12 residues within 4Å: Chain G: L.49, N.138, Q.139, T.140, H.141, A.320, G.321, V.322, P.323 Chain H: G.248, F.249, V.254 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:L.49 NAG-NAG-BMA-MAN-MAN.17: 12 residues within 4Å: Chain I: L.49, N.138, Q.139, T.140, H.141, A.320, G.321, V.322, P.323 Chain J: G.248, F.249, V.254 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:L.49 NAG-NAG-BMA-MAN-MAN.21: 12 residues within 4Å: Chain K: L.49, N.138, Q.139, T.140, H.141, A.320, G.321, V.322, P.323 Chain L: G.248, F.249, V.254 1 PLIP interactions: 1 interactions with chain K Hydrophobic interactions: K:L.49 NAG-NAG-BMA-MAN-MAN.25: 12 residues within 4Å: Chain M: L.49, N.138, Q.139, T.140, H.141, A.320, G.321, V.322, P.323 Chain N: G.248, F.249, V.254 1 PLIP interactions: 1 interactions with chain M Hydrophobic interactions: M:L.49 NAG-NAG-BMA-MAN-MAN.29: 12 residues within 4Å: Chain O: L.49, N.138, Q.139, T.140, H.141, A.320, G.321, V.322, P.323 Chain P: G.248, F.249, V.254 1 PLIP interactions: 1 interactions with chain O Hydrophobic interactions: O:L.49

8 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 6 residues within 4Å: Chain A: V.278, P.280, N.350 Chain B: Y.94, T.100, M.234 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.94, B:M.234 NAG-NAG-BMA-MAN.6: 6 residues within 4Å: Chain C: V.278, P.280, N.350 Chain D: Y.94, T.100, M.234 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Y.94, D:M.234 NAG-NAG-BMA-MAN.10: 6 residues within 4Å: Chain E: V.278, P.280, N.350 Chain F: Y.94, T.100, M.234 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:Y.94, F:M.234 NAG-NAG-BMA-MAN.14: 6 residues within 4Å: Chain G: V.278, P.280, N.350 Chain H: Y.94, T.100, M.234 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:Y.94, H:M.234 NAG-NAG-BMA-MAN.18: 6 residues within 4Å: Chain I: V.278, P.280, N.350 Chain J: Y.94, T.100, M.234 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:Y.94, J:M.234 NAG-NAG-BMA-MAN.22: 6 residues within 4Å: Chain K: V.278, P.280, N.350 Chain L: Y.94, T.100, M.234 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:Y.94, L:M.234 NAG-NAG-BMA-MAN.26: 6 residues within 4Å: Chain M: V.278, P.280, N.350 Chain N: Y.94, T.100, M.234 1 PLIP interactions: 1 interactions with chain N Hydrogen bonds: N:Y.94, N:M.234 NAG-NAG-BMA-MAN.30: 6 residues within 4Å: Chain O: V.278, P.280, N.350 Chain P: Y.94, T.100, M.234 1 PLIP interactions: 1 interactions with chain P Hydrogen bonds: P:Y.94, P:M.234

8 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.3: 6 residues within 4Å: Chain A: R.159, K.176, N.402, V.413, R.415, G.440 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.159 NAG-NAG-BMA-MAN.7: 6 residues within 4Å: Chain C: R.159, K.176, N.402, V.413, R.415, G.440 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.159 NAG-NAG-BMA-MAN.11: 6 residues within 4Å: Chain E: R.159, K.176, N.402, V.413, R.415, G.440 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.159 NAG-NAG-BMA-MAN.15: 6 residues within 4Å: Chain G: R.159, K.176, N.402, V.413, R.415, G.440 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:R.159 NAG-NAG-BMA-MAN.19: 6 residues within 4Å: Chain I: R.159, K.176, N.402, V.413, R.415, G.440 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:R.159 NAG-NAG-BMA-MAN.23: 6 residues within 4Å: Chain K: R.159, K.176, N.402, V.413, R.415, G.440 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:R.159 NAG-NAG-BMA-MAN.27: 6 residues within 4Å: Chain M: R.159, K.176, N.402, V.413, R.415, G.440 1 PLIP interactions: 1 interactions with chain M Hydrogen bonds: M:R.159 NAG-NAG-BMA-MAN.31: 6 residues within 4Å: Chain O: R.159, K.176, N.402, V.413, R.415, G.440 1 PLIP interactions: 1 interactions with chain O Hydrogen bonds: O:R.159

8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.4: 5 residues within 4Å: Chain B: S.277, F.278, N.279, D.296, N.298 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 5 residues within 4Å: Chain D: S.277, F.278, N.279, D.296, N.298 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 5 residues within 4Å: Chain F: S.277, F.278, N.279, D.296, N.298 No protein-ligand interaction detected (PLIP) NAG-NAG.16: 5 residues within 4Å: Chain H: S.277, F.278, N.279, D.296, N.298 No protein-ligand interaction detected (PLIP) NAG-NAG.20: 5 residues within 4Å: Chain J: S.277, F.278, N.279, D.296, N.298 No protein-ligand interaction detected (PLIP) NAG-NAG.24: 5 residues within 4Å: Chain L: S.277, F.278, N.279, D.296, N.298 No protein-ligand interaction detected (PLIP) NAG-NAG.28: 5 residues within 4Å: Chain N: S.277, F.278, N.279, D.296, N.298 No protein-ligand interaction detected (PLIP) NAG-NAG.32: 5 residues within 4Å: Chain P: S.277, F.278, N.279, D.296, N.298 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, L. et al., High-resolution in situ structures of hantavirus glycoprotein tetramers. Biorxiv (2025)

Release Date

2025-07-30

Peptides

Glycoprotein N: ACEGIKMO
Glycoprotein C: BDFHJLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
O

K
I

M
K

O
M

B
B

D
D

F
F

H
H

J
P

L
J

N
L

P
N

Membrane

We predict this structure to be a membrane protein.
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Glycoprotein N

Glycoprotein C

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