SMTL ID : 9p3y.1

Andes virus glycoprotein tetramer in complex with ADI-65534 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-4-mer

Ligands

4 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 10 residues within 4Å: Chain I: L.49, N.138, Q.139, T.140, H.141, A.320, G.321, V.322, P.323 Chain J: F.249 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:L.49 NAG-NAG-BMA-MAN-MAN.3: 10 residues within 4Å: Chain K: L.49, N.138, Q.139, T.140, H.141, A.320, G.321, V.322, P.323 Chain L: F.249 1 PLIP interactions: 1 interactions with chain K Hydrophobic interactions: K:L.49 NAG-NAG-BMA-MAN-MAN.5: 10 residues within 4Å: Chain M: L.49, N.138, Q.139, T.140, H.141, A.320, G.321, V.322, P.323 Chain N: F.249 1 PLIP interactions: 1 interactions with chain M Hydrophobic interactions: M:L.49 NAG-NAG-BMA-MAN-MAN.7: 10 residues within 4Å: Chain O: L.49, N.138, Q.139, T.140, H.141, A.320, G.321, V.322, P.323 Chain P: F.249 1 PLIP interactions: 1 interactions with chain O Hydrophobic interactions: O:L.49

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain I: P.280, N.350 Chain J: Y.94, T.100 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain K: P.280, N.350 Chain L: Y.94, T.100 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain M: P.280, N.350 Chain N: Y.94, T.100 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 4 residues within 4Å: Chain O: P.280, N.350 Chain P: Y.94, T.100 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.9: 6 residues within 4Å: Chain I: R.159, K.176, N.402, V.413, R.415, G.440 4 PLIP interactions: 4 interactions with chain I Hydrogen bonds: I:R.159, I:N.402, I:R.415, I:G.440 NAG.10: 6 residues within 4Å: Chain K: R.159, K.176, N.402, V.413, R.415, G.440 4 PLIP interactions: 4 interactions with chain K Hydrogen bonds: K:R.159, K:N.402, K:R.415, K:G.440 NAG.11: 6 residues within 4Å: Chain M: R.159, K.176, N.402, V.413, R.415, G.440 4 PLIP interactions: 4 interactions with chain M Hydrogen bonds: M:R.159, M:N.402, M:R.415, M:G.440 NAG.12: 6 residues within 4Å: Chain O: R.159, K.176, N.402, V.413, R.415, G.440 4 PLIP interactions: 4 interactions with chain O Hydrogen bonds: O:R.159, O:N.402, O:R.415, O:G.440

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, L. et al., High-resolution in situ structures of hantavirus glycoprotein tetramers. Biorxiv (2025)

Release Date

2025-07-30

Peptides

ADI-65534 variable heavy chain: ACEG
ADI-65534 variable light chain: BDFH
Glycoprotein N: IKMO
Glycoprotein C: JLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

C
K

E
M

G
O

B
J

D
L

F
N

H
P

I
A

K
C

M
E

O
G

J
B

L
D

N
F

P
H

ADI-65534 variable heavy chain

ADI-65534 variable light chain

Glycoprotein N

Glycoprotein C

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