SMTL ID : 9p7q.1

273K human S-adenosylmethionine decarboxylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 9 residues within 4Å: Chain A: F.20 Chain B: F.156, P.158, C.159, G.160, T.178, P.179, E.180, F.183 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:C.159, B:E.180, B:E.180

1 x PUT: 1,4-DIAMINOBUTANE(Non-covalent)

PUT.2: 9 residues within 4Å: Chain A: L.26, E.28, W.30 Chain B: F.44, S.46, D.107, T.109, F.218, Y.251 7 PLIP interactions: 1 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:E.28 Hydrophobic interactions: B:F.44, B:T.109, B:F.218, B:F.218 Water bridges: B:S.46, B:T.109

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain B: P.119, D.123 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, J.R. et al., Multi-Temperature Crystallography of S-Adenosylmethionine Decarboxylase Observes Dynamic Loop Motions. Biomolecules (2025)

Release Date

2025-09-17

Peptides

S-adenosylmethionine decarboxylase beta chain: A
S-adenosylmethionine decarboxylase alpha chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

S-adenosylmethionine decarboxylase beta chain

S-adenosylmethionine decarboxylase alpha chain

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