SMTL ID : 9p8w.1

Anti-phage dGTPase from Shewanella putrefaciens CN-32

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

homo-hexamer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: H.59, H.100, D.101, D.254, Y.258 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.59, A:H.100, A:D.101, A:D.254, A:Y.258 MG.2: 5 residues within 4Å: Chain B: H.59, H.100, D.101, D.254, Y.258 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.59, B:H.100, B:D.101, B:D.254, B:Y.258 MG.3: 5 residues within 4Å: Chain C: H.59, H.100, D.101, D.254, Y.258 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:H.59, C:H.100, C:D.101, C:D.254, C:Y.258 MG.4: 5 residues within 4Å: Chain D: H.59, H.100, D.101, D.254, Y.258 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:H.59, D:H.100, D:D.101, D:D.254, D:Y.258 MG.5: 5 residues within 4Å: Chain E: H.59, H.100, D.101, D.254, Y.258 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:H.59, E:H.100, E:D.101, E:D.254, E:Y.258 MG.6: 5 residues within 4Å: Chain F: H.59, H.100, D.101, D.254, Y.258 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:H.59, F:H.100, F:D.101, F:D.254, F:Y.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamaguchi, S. et al., Activating and inhibiting nucleotide signals coordinate bacterial anti-phage defense. Biorxiv (2025)

Release Date

2025-07-30

Peptides

Deoxyguanosinetriphosphate triphosphohydrolase-like protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Deoxyguanosinetriphosphate triphosphohydrolase-like protein