SMTL ID : 9pln.1

Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.80 Å

Oligo State

monomer

Ligands

1 x 01: N-(5-methylnaphthalen-1-yl)pyridin-4-amine

01.1: 15 residues within 4Å: Chain A: D.154, V.155, C.158, T.159, I.231, S.241, C.242, S.245, W.428, F.431, F.432, Y.435, F.453, G.456, Y.457 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.155, A:F.432, A:Y.435 Hydrogen bonds: A:D.154, A:D.154, A:F.453, A:Y.457 pi-Stacking: A:F.431, A:F.431, A:F.453

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Toward a Random Background for Ligand Optimization. To Be Published

Release Date

2025-08-20

Peptides

Alpha-2A adrenergic receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

Membrane

We predict this structure to be a membrane protein.
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Alpha-2A adrenergic receptor

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