SMTL ID : 9pw4.1

Structure of V30V4 in complex with SARS-CoV-2 spike

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 6 residues within 4Å: Chain A: F.338, G.339, N.343, L.368 Chain C: T.56 Chain E: Y.103 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:Y.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dingus, J. et al., Affinity Maturation and light-Chain-Mediated Paratope Diversification Anticipates Viral Evolution. To Be Published

Release Date

2025-11-19

Peptides

Spike protein S1: A
V30V4 FAB LIGHT CHAIN: B
SP1-77 FAB LIGHT CHAIN: C
V30V4 FAB HEAVY CHAIN: D
SP1-77 FAB HEAVY CHAIN: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
F

D
C

E
E

Spike protein S1

V30V4 FAB LIGHT CHAIN

SP1-77 FAB LIGHT CHAIN

V30V4 FAB HEAVY CHAIN

SP1-77 FAB HEAVY CHAIN

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