SMTL ID : 9pw7.1

Myeloid cell leukemia-1 (Mcl-1) complexed with compound 13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:Y.156, A:R.345 Water bridges: A:D.66, A:R.345

1 x 01: (2S,4R,5S,12P,23R)-11-chloro-7-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-27,28-dimethoxy-4,15-dimethyl-32-oxo-19-oxa-2,5,15,16,23-pentaazaheptacyclo[21.6.1.1~2,6~.1~5,8~.0~12,31~.0~13,17~.0~26,30~]dotriaconta-1(30),6,8(31),9,11,13,16,24,26,28-decaene-24-carboxylic acid (non-preferred name)

01.2: 18 residues within 4Å: Chain A: A.424, F.425, M.428, L.432, L.443, M.447, V.450, F.451, G.454, V.455, N.457, G.459, R.460, T.463, L.464, F.467, G.468, I.491 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.425, A:L.432, A:V.450, A:F.451, A:T.463, A:L.464, A:F.467, A:F.467, A:F.467, A:I.491 Hydrogen bonds: A:V.455, A:N.457, A:R.460 Water bridges: A:T.463 pi-Stacking: A:F.467 pi-Cation interactions: A:R.460 Halogen bonds: A:A.424

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tarr, J.C. et al., Discovery of Macrocyclic Myeloid Cell Leukemia 1 (Mcl-1) Inhibitors that Demonstrate Potent Cellular Efficacy and In Vivo Activity in a Mouse Solid Tumor Xenograft Model. J.Med.Chem. (2025)

Release Date

2025-09-17

Peptides

Maltodextrin-binding protein,Induced myeloid leukemia cell differentiation protein Mcl-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltodextrin-binding protein,Induced myeloid leukemia cell differentiation protein Mcl-1