SMTL ID : 9px5.1

Crystal structure of Fab 7268 in complex with MBP-TREM2 Ig domain fusion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x BGC- GLC: alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GLC.1: 13 residues within 4Å: Chain A: D.14, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, M.330, W.340 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.111, A:E.111, A:W.62, A:Y.155

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: N.100, G.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.100, A:G.101 SO4.3: 1 residues within 4Å: Chain A: H.393 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.393

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

da Silva Almeida, A. et al., Building a potent TREM2 agonistic, biparatopic, common light chain antibody. Mabs (2025)

Release Date

2025-09-10

Peptides

Maltose/maltodextrin-binding periplasmic protein,Triggering receptor expressed on myeloid cells 2: A
7268 Fab Heavy Chain: B
7268 Fab Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Maltose/maltodextrin-binding periplasmic protein,Triggering receptor expressed on myeloid cells 2

7268 Fab Heavy Chain

7268 Fab Light Chain

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