SMTL ID : 9pyv.1

Crystal structure of Uracil-DNA glycosylase from Burkholderia thailandensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: P.21, R.24 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: A.35 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: R.172 Ligand excluded by PLIP

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: K.71, R.232, A.233 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.233 Water bridges: A:R.232 Salt bridges: A:K.71 SO4.5: 3 residues within 4Å: Chain A: N.109, P.207, H.211 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.109 Water bridges: A:R.108, A:K.112, A:K.112, A:P.207 Salt bridges: A:K.112, A:H.211 SO4.6: 4 residues within 4Å: Chain A: Y.80, P.104, P.105, S.106 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.106, A:S.106, A:S.106 SO4.7: 1 residues within 4Å: Chain A: R.189 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.189 SO4.8: 2 residues within 4Å: Chain A: R.60, R.63 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.60, A:R.63 SO4.9: 3 residues within 4Å: Chain A: A.154, K.155, R.156 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.154, A:K.155, A:R.156 Water bridges: A:G.157 Salt bridges: A:R.156 SO4.10: 4 residues within 4Å: Chain A: R.189, P.194, R.195, V.199 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.195, A:E.201, A:E.201 Salt bridges: A:R.189, A:R.195 SO4.11: 2 residues within 4Å: Chain A: P.105, R.108 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Enayati, P. et al., Crystal structure of Uracil-DNA glycosylase from Burkholderia thailandensis. To be published

Release Date

2025-08-20

Peptides

Uracil-DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uracil-DNA glycosylase