SMTL ID : 9q35.1

Fibrinogen domain dimer from human Fibrinogen-like protein 1 (FGL-1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-dimer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: R.68, G.69, D.72, W.170 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.69, A:D.72, A:D.72, A:W.170 Water bridges: A:R.68 EDO.2: 6 residues within 4Å: Chain A: T.104, Q.120, R.236, P.237, N.238, F.240 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.120, A:R.236, A:R.236 EDO.3: 5 residues within 4Å: Chain A: F.29, Y.30, K.31, S.42 Chain B: V.4 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.31, A:S.42 EDO.4: 6 residues within 4Å: Chain A: F.41, S.42, N.75, F.80, L.89, N.93 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.42, A:S.42, A:N.75, A:N.93 EDO.5: 5 residues within 4Å: Chain A: H.95, F.96, D.128, E.129, Y.133 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.129 Water bridges: A:E.129, A:Y.133 EDO.6: 4 residues within 4Å: Chain B: R.68, G.69, D.72, W.170 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.69, B:D.72, B:D.72, B:W.170 Water bridges: B:R.68 EDO.7: 6 residues within 4Å: Chain B: T.104, Q.120, R.236, P.237, N.238, F.240 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.120, B:R.236, B:R.236 EDO.8: 5 residues within 4Å: Chain A: V.4 Chain B: F.29, Y.30, K.31, S.42 2 PLIP interactions: 2 interactions with chain B Water bridges: B:K.31, B:S.42 EDO.9: 6 residues within 4Å: Chain B: F.41, S.42, N.75, F.80, L.89, N.93 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.42, B:S.42, B:N.75, B:N.93 EDO.10: 5 residues within 4Å: Chain B: H.95, F.96, D.128, E.129, Y.133 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.129 Water bridges: B:E.129, B:Y.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nyovanie, S. et al., Fibrinogen domain dimer from human Fibrinogen-like protein 1 (FGL-1). To Be Published

Release Date

2025-09-24

Peptides

Fibrinogen-like protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Fibrinogen-like protein 1