SMTL ID : 9qba.1

Human TRIM21 PRYSPRY domain in complex with AL236

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x 01: ~{N}-(cyclohexylmethyl)-4-(4-fluoranyl-2-methylsulfanyl-phenyl)-2-methylsulfonyl-benzamide

01.1: 18 residues within 4Å: Chain A: Y.42, P.43, M.44, A.67, W.68, D.69, F.83, L.84, L.85, S.86, W.95, L.96, W.97, G.105, T.106, S.161, G.163, F.164 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:D.69, A:L.85, A:W.95, A:W.95, A:W.97 Hydrogen bonds: A:L.85 pi-Stacking: A:W.95, A:W.95

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: V.62, T.63, G.64, P.117, P.118, C.119 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.64 EDO.3: 5 residues within 4Å: Chain A: E.66, A.67, W.97, N.98, D.166 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.66, A:N.98 Water bridges: A:E.66, A:F.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, A. et al., Human TRIM21 PRYSPRY domain in complex with AL236. To Be Published

Release Date

2025-03-12

Peptides

E3 ubiquitin-protein ligase TRIM21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase TRIM21