SMTL ID : 9qbj.1

Legobody dimer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.20 Å

Oligo State

hetero-2-2-2-1-1-mer

Ligands

2 x BGC- GLC: alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GLC.1: 11 residues within 4Å: Chain G: D.23, K.24, A.72, D.74, R.75, E.162, P.163, Y.164, W.239, M.339, W.349 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:K.24, G:D.74, G:R.75, G:Y.164 Salt bridges: G:K.24 BGC-GLC.2: 10 residues within 4Å: Chain H: W.71, A.72, D.74, E.120, E.162, P.163, Y.164, W.239, M.339, W.349 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:E.120, H:E.162, H:E.162, H:D.74, H:E.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pacesa, M. et al., Structure of a cryoEM scaffold. To Be Published

Release Date

2025-06-11

Peptides

Nanobody ALFA-H6: AB
Fab antibody 8D3_2_H-H6: CE
Fa antibody 8D3_2_L: DF
Maltose/maltodextrin-binding periplasmic protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G: G
Maltose/maltodextrin-binding periplasmic protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

E
G

D
F

F
H

G
I

H
J

Nanobody ALFA-H6

Fab antibody 8D3_2_H-H6

Fa antibody 8D3_2_L

Maltose/maltodextrin-binding periplasmic protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G

Maltose/maltodextrin-binding periplasmic protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G

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