SMTL ID : 9qcl.1

S.aureus ClpC tetradecameric resting state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.70 Å

Oligo State

homo-14-mer

Ligands

7 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)(Non-covalent)

ATP.1: 13 residues within 4Å: Chain B: I.511, T.547, G.548, V.549, G.550, K.551, T.552, E.553, I.722, M.725, M.726, A.762, R.763 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:I.511, B:I.511, B:G.548, B:V.549, B:G.550, B:K.551, B:T.552, B:T.552, B:T.552 Salt bridges: B:R.763, B:R.763, B:R.763 ATP.2: 13 residues within 4Å: Chain C: R.509, V.510, I.511, T.547, G.548, V.549, G.550, K.551, T.552, I.722, M.725, M.726, R.763 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:I.511, C:I.511, C:G.548, C:V.549, C:K.551, C:T.552, C:T.552, C:T.552 Salt bridges: C:R.763, C:R.763, C:R.763 ATP.3: 16 residues within 4Å: Chain D: R.509, V.510, I.511, T.547, G.548, V.549, G.550, K.551, T.552, E.553, I.722, M.725, M.726, A.762, R.763 Chain E: N.703 11 PLIP interactions: 10 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:I.511, D:I.511, D:G.548, D:G.550, D:T.552, D:T.552, D:E.553, E:N.703 Salt bridges: D:R.763, D:R.763, D:R.763 ATP.4: 12 residues within 4Å: Chain E: V.510, I.511, T.547, G.548, V.549, G.550, K.551, T.552, E.553, I.722, M.725, R.763 12 PLIP interactions: 12 interactions with chain E Hydrogen bonds: E:I.511, E:I.511, E:G.548, E:K.551, E:T.552, E:T.552, E:T.552, E:E.553, E:E.553 Salt bridges: E:R.763, E:R.763, E:R.763 ATP.6: 16 residues within 4Å: Chain I: R.509, V.510, I.511, T.547, G.548, V.549, G.550, K.551, T.552, E.553, R.571, D.617, I.722, M.725, A.762, R.763 14 PLIP interactions: 14 interactions with chain I Hydrogen bonds: I:I.511, I:I.511, I:T.547, I:G.548, I:K.551, I:T.552, I:T.552, I:T.552, I:E.553, I:D.617, I:R.763 Salt bridges: I:R.571, I:R.763, I:R.763 ATP.7: 14 residues within 4Å: Chain J: R.509, V.510, I.511, T.547, G.548, V.549, G.550, K.551, T.552, I.722, M.725, R.763, I.766 Chain K: N.703 15 PLIP interactions: 14 interactions with chain J, 1 interactions with chain K Hydrogen bonds: J:I.511, J:I.511, J:T.547, J:T.547, J:G.548, J:V.549, J:G.550, J:T.552, J:T.552, J:T.552, J:T.552, J:T.552, K:N.703 Salt bridges: J:R.763, J:R.763 ATP.8: 16 residues within 4Å: Chain K: R.509, V.510, I.511, T.547, G.548, V.549, G.550, K.551, T.552, E.553, R.571, D.617, M.725, R.763, I.766 Chain L: N.703 13 PLIP interactions: 12 interactions with chain K, 1 interactions with chain L Hydrogen bonds: K:I.511, K:I.511, K:T.547, K:G.548, K:V.549, K:G.550, K:K.551, K:T.552, K:T.552, K:E.553, K:R.571, L:N.703 Salt bridges: K:R.763

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.5: 15 residues within 4Å: Chain F: R.509, V.510, I.511, T.547, G.548, V.549, G.550, T.552, E.553, R.571, I.722, M.725, A.762, R.763, I.766 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:R.509, F:I.511, F:G.548, F:K.551, F:T.552, F:T.552, F:T.552, F:R.571, F:A.762

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jenne, T. et al., Allosteric control of the bacterial ClpC/ClpP protease and its hijacking by antibacterial peptides. To Be Published

Release Date

2025-08-27

Peptides

ATP-dependent Clp protease ATP-binding subunit ClpC: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
N

B
M

C
L

D
K

E
J

F
I

G
H

H
C

I
D

J
E

K
F

L
G

M
A

N
B

ATP-dependent Clp protease ATP-binding subunit ClpC

Related Entries With Identical Sequence