SMTL ID : 9qky.1

The structure of the DNA-binding domain of Nuclear Factor 1 X bound to NFI consensus DNA sequence

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.86 Å

Oligo State

homo-octamer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.92, C.145, C.151, H.156 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.92, A:C.145, A:C.151, A:H.156 ZN.2: 5 residues within 4Å: Chain B: C.92, C.145, S.146, C.151, H.156 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.92, B:C.145, B:C.151, B:H.156 ZN.3: 4 residues within 4Å: Chain E: C.92, C.145, C.151, H.156 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.92, E:C.145, E:C.151, E:H.156 ZN.4: 5 residues within 4Å: Chain F: C.92, C.145, S.146, C.151, H.156 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.92, F:C.145, F:C.151, F:H.156 ZN.5: 4 residues within 4Å: Chain I: C.92, C.145, C.151, H.156 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.92, I:C.145, I:C.151, I:H.156 ZN.6: 5 residues within 4Å: Chain J: C.92, C.145, S.146, C.151, H.156 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.92, J:C.145, J:C.151, J:H.156 ZN.7: 4 residues within 4Å: Chain M: C.92, C.145, C.151, H.156 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.92, M:C.145, M:C.151, M:H.156 ZN.8: 5 residues within 4Å: Chain N: C.92, C.145, S.146, C.151, H.156 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.92, N:C.145, N:C.151, N:H.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tiberi, M. et al., Structural determinants of dimerization, activation and sequence-specific DNA binding by the transcription factor NFI-X: a prototype for the NFI family. To Be Published

Release Date

2025-09-17

Peptides

Nuclear factor 1 X-type: ABEFIJMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
E

F
F

I
I

J
J

M
M

N
N

Nuclear factor 1 X-type