SMTL ID : 9qlf.1

Human myoferlin (1-1997) in complex with an MSP2N2 lipid nanodisc (25 mol% DOPS, 5 mol% PI(4,5)P2 and 5 mol% Cholesterol)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

2 x PSF: 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE(Non-covalent)

PSF.1: 13 residues within 4Å: Chain A: M.424, D.425, D.426, F.428, D.497, T.500, D.503, Y.564, T.565, G.566, F.567 Ligands: CA.3, CA.8 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.426, A:F.428, A:F.428 Hydrogen bonds: A:Y.564, A:D.569 PSF.10: 10 residues within 4Å: Chain A: Q.1619, D.1620, N.1621, D.1677, F.1679, T.1680, R.1681, E.1683 Ligands: CA.7, CA.9 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.1679, A:T.1680 Hydrogen bonds: A:N.1621, A:T.1680, A:E.1683 Salt bridges: A:R.1681

10 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.425, D.447, D.495, W.496, D.497 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.425, A:D.425, A:D.495, A:W.496, A:D.497 CA.3: 7 residues within 4Å: Chain A: M.424, D.425, D.495, D.497, D.503 Ligands: PSF.1, CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:M.424, A:D.425, A:D.495, A:D.497, A:D.503 CA.4: 6 residues within 4Å: Chain A: D.1206, D.1212, D.1268, N.1269, D.1270 Ligands: CA.5 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.1206, A:D.1212, A:D.1268, A:N.1269, A:D.1270 CA.5: 6 residues within 4Å: Chain A: L.1205, D.1206, D.1268, D.1270, E.1276 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:L.1205, A:D.1206, A:D.1268, A:D.1270, A:E.1276 CA.6: 6 residues within 4Å: Chain A: D.1620, D.1626, D.1675, Y.1676, D.1677 Ligands: CA.7 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.1620, A:D.1626, A:D.1675, A:Y.1676, A:D.1677 CA.7: 8 residues within 4Å: Chain A: Q.1619, D.1620, D.1675, D.1677, E.1683 Ligands: CA.6, CA.9, PSF.10 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:Q.1619, A:D.1620, A:D.1675, A:D.1677, A:E.1683 CA.8: 5 residues within 4Å: Chain A: D.497, T.500, K.501, D.503 Ligands: PSF.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.497, A:T.500, A:K.501, A:D.503 CA.9: 6 residues within 4Å: Chain A: D.1677, T.1680, R.1681, E.1683 Ligands: CA.7, PSF.10 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.1677, A:T.1680, A:R.1681, A:E.1683, A:E.1683 CA.11: 6 residues within 4Å: Chain A: D.1854, M.1863, D.1865, D.1940, N.1941, D.1942 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.1854, A:D.1865, A:D.1942 CA.12: 6 residues within 4Å: Chain A: D.1854, E.1855, S.1857, D.1940, D.1942, D.1948 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.1854, A:D.1940, A:D.1942, A:D.1942, A:D.1948

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cretu, C. et al., Structural insights into lipid membrane binding by human ferlins. Embo J. (2025)

Release Date

2025-06-04

Peptides

Myoferlin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Myoferlin

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