SMTL ID : 9qls.1

Human dysferlin (1-2017) in the lipid-free, Ca2+-bound state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.1215, D.1221, D.1277, H.1278, D.1279 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.1215, A:D.1221, A:D.1277, A:H.1278, A:D.1279 CA.2: 6 residues within 4Å: Chain A: M.441, D.442, D.512, D.514, D.520 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.442, A:D.512, A:D.514, A:D.514, A:D.520 CA.3: 6 residues within 4Å: Chain A: D.442, D.464, D.512, W.513, D.514 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.442, A:D.464, A:D.512, A:W.513, A:D.514 CA.4: 5 residues within 4Å: Chain A: D.1215, D.1277, D.1279, E.1285 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.1215, A:D.1277, A:D.1279, A:D.1279, A:E.1285 CA.5: 6 residues within 4Å: Chain A: D.1641, D.1696, Y.1697, D.1698, E.1704 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.1641, A:D.1696, A:Y.1697, A:D.1698, A:D.1698 CA.6: 6 residues within 4Å: Chain A: D.1641, K.1645, D.1647, D.1696, Y.1697 Ligands: CA.5 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.1641, A:D.1641, A:D.1647, A:D.1696, A:Y.1697

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cretu, C. et al., Structural insights into lipid membrane binding by human ferlins. Embo J. (2025)

Release Date

2025-06-04

Peptides

Dysferlin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dysferlin